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$137 Flights from +1(800) 348-5370 SAN JUAN (SJU) to Cancun (CUN) Booking Cheap Flights from San Juan (SJU)to Cancun (CUN) What are the Best Airlines for Flights from San Juan to Cancun? If you are planning a trip from San Juan to Cancun, you need to consider the best airlines for your flight. With so many options available, it can be difficult to choose the right airline for your journey. To make this process easier, we have done some research and compiled a list of the best airlines offering flights from San Juan to Cancun.